Package index
Conduct specification curve analysis
Core functions of the package that allow to a) setup all specifications, b) fit models across all specifications, and c) conduct inference on the resulting specification curve
-
setup() - Specifying analytical decisions in a specification setup
-
specr() - Fit models across all specifications
-
infer_curve() - Inference on the specification curve
Summarize results
All functions above create S3 classes that can be investigated with the generic summary function and transformed to data frames.
-
summary(<specr.setup>) - Summarizing the Specifications Setup
-
summary(<specr.object>) - Summarizing the Specification Curve Analysis
-
summary(<specr.infer>) - Summarizing inference on the specification curve
Visualizations
After running setup(), specr(), or infer_curve(), the resulting S3 class objects can be passed to the generic plot function to create visualizations.
-
plot(<specr.setup>) - Plot visualization of the specification setup
-
plot(<specr.object>) - Plot specification curve and analytic choices
-
plot(<specr.infer>) - Plot specification curve against curves under the null
-
example_data - Example data set
Deprecated
The following functions still exist and can be used, but are deprecated from version 1.0.0 on.
-
setup_specs()deprecated - Set up specifications
-
run_specs()deprecated - Estimate all specifications
-
plot_specs()deprecated - Plot specification curve and analytical choices
-
plot_curve()deprecated - Plot ranked specification curve
-
plot_choices()deprecated - Plot how analytical choices affect results
-
plot_summary()deprecated - Create box plots for given analytical choices
-
plot_samplesizes()deprecated - Plot sample sizes
-
plot_variance()deprecated - Plot variance decomposition
-
plot_decisiontree()deprecated - Plot decision tree
-
summarise_specs()deprecated - Summarise specifications
-
icc_specs()deprecated - Compute intraclass correlation coefficient